For those looking for some genital warts home treatment, you can ask your doctor to prescribe either podofilox (Condylox) or imiquimod (Aldara). Both of these topical medications you can apply yourself at home. However, if you are pregnant, it is not recommended that you use either podophyllin or podofilox as both can be absorbed by your skin and possibly cause birth defects in your child. Additionally, Aldara is designed to be used only on external genital warts.

It is also important to note that there is a difference between genital warts and regular warts. The strains of HPV that cause genital warts are different from those strains that cause warts on other parts of your body. Moreover, genital warts appear on areas of your body that are much more sensitive. Therefore, you should never use regular, over-the-counter wart treatments for genital warts.
References :